Heimdall.fe.IdentityFe

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Heimdall.fe.IdentityFe#

class Heimdall.fe.IdentityFe(data, vocab_size, embedding_parameters, d_embedding, pad_value=None, mask_value=None, drop_zeros=True, rng=0)[source]#

Bases: Fe

Directly pass the continuous values. Remove zeros.

Parameters:

  • adata – input AnnData-formatted dataset, with gene names in the .var dataframe.

  • d_embedding (int) – dimensionality of embedding for each expression entity

  • embedding_parameters (DictConfig) – dimensionality of embedding for each expression entity

  • data (CellRepresentation)

  • vocab_size (int)

  • pad_value (int)

  • mask_value (int)

  • drop_zeros (bool)

  • rng (int | Generator)

Attributes

Methods

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